Tutorial on Genome-Scale Phylogenetics Using Gene Tree Parsimony
Trees in the Desert Workshop (April 2019)
- Presentation slides
- Sample data set
- DupTree download and manual: DupTree webpage
- iGTP download and manual: iGTP webpage
- DupLoss executables
DupTree can be cited as follows:
- DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
Andre Wehe, Mukul S. Bansal, J. G. Burleigh, Oliver Eulenstein.
Bioinformatics, 24(13): 1540-1541, 2008.
iGTP and DupLoss can be cited as
- iGTP: A software package for large-scale gene tree parsimony analysis
Ruchi Chaudhary, Mukul S. Bansal, Andre Wehe, David Fernández-Baca, Oliver Eulenstein.
BMC Bioinformatics, 11:574, 2010.